Visualise assemblies using the new BlobToolKit viewer (blobtoolkit.genomehubs.org/view/, github.com/blobtoolkit/viewer): Example using data obtained from ENA for the Pacific oyster Crassostrea gigas (AFTI01). Processed using a BlobToolKit Snakemake pipeline available at github.com/blobtoolkit/insdc-pipeline.
Dom Laetsch and Mark Blaxter’s BlobTools manuscript1 is now available on F1000 Research. This Manuscript describes BlobTools version 1, which is available at github.com/DRL/blobtools. 1 Laetsch & Blaxter 2017. BlobTools: Interrogation of genome assemblies [version 1; referees: awaiting peer review]. F1000Research, 6:1287 (doi: 10.12688/f1000research.12232.1)
The BlobToolKit project has been funded by the BBSRC for 3 years to develop the latest iteration of the Blobology/Blobtools genome assembly QC, visualisation and filtering tools. The project is a collaboration between the research groups of Mark Blaxter at the University of Edinburgh and Guy Cochrane at EMBL-EBI to develop software tools and protocols […]